PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00883.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 476aa    MW: 52856.7 Da    PI: 4.4276
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00883.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27136201171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
  Rsa1.0_00883.1_g00005.1 136 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIQWKG 201
                              6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-29133203IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-35136201IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-17136199IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.6E-24138201IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146608.60E-46212318No hitNo description
SuperFamilySSF1440747.32E-32213318No hitNo description
PfamPF164216.6E-32217316IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSDSQQEEPE QQHPPPKRQH HISVASMNPP LVAPGEYHRF DDAAAETRPD QVSEAIVIKS  60
SMTDMVNQNE PSELNAGVLL RTPISGKGGK AKKSSRSVKY NKIGTQASAG FNAGEFWPEM  120
VLCSPGNNFA QAGTCRYDSS LGLLTKKFIN LIKQAEDGIL DLNKAADTLE VQKRRIYDIT  180
NVLEGIGLIE KTLKNRIQWK GLDVSKPGET LENIANLQDE IQNLTAEEAK LDDRIRESQE  240
RLTSLSEDEN NKRLLFVTED DIKNLPCFQN KTLIAVKAPH GTTLEVPDPD EAGGYPQRRY  300
RIILRSTMGP IDVYLVSQFE ERFEDIPDVD DPSNVPSTSG VPENQDVAVP IGEDSTIKNM  360
ETQEVDDTQR VYSDMESHDF VDGIMKIVPP DLDMDVDYWL RSEVGEVSIT DMWPNESGSN  420
WNNQMLSFHQ GAGPNWNHQM VSNDQGAGPS NTTQELPKTL SSPKREQSTA TTSAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-25136202774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4000000.0AF400000.1 Thlaspi caerulescens E2F-related transcription factor 1 (E2F1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622097.10.0PREDICTED: transcription factor E2FB-like
SwissprotQ9FV710.0E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0D3B2980.0A0A0D3B298_BRAOL; Uncharacterized protein (Fragment)
STRINGBra006615.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.20.0E2F transcription factor 1